Getting "Cytofkit2" to work

After a couple of hours I have finally resolved the issues I was experiencing trying to get the shinyapp to work for the Cytofkit2 package.

Here was the code that finally worked for me:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cytofkit")
if(!require(devtools)){
  install.packages("devtools") # If not already installed
}
a
devtools::install_github("JinmiaoChenLab/cytofkit2")
#install the "Reticulate" package to run python through R
install.packages("reticulate")
install.packages("plotly")
install.packages('DT')
install.packages("shinydashboard")
install.packages("shinyalert")
install.packages("shinyWidgets")
library("cytofkit2")
cytofkit_shiny_dashboard()

It looks like some other users were experiencing a variety of issues.

Now I am facing a different issue when trying to analyze the data by PhenoGraph and UMAP, see it here. It looks like the inability of the program to recognize the selection of "cytofAsinh" as a transformation method is a bug that other users have experienced and needs to be resolved by developers.

-Abby